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Indonesia

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Information for Bali
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General
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Bali is one of the main tourist destinations for many Irish travellers to Indonesia. The island is well developed for the tourist industry and genera
ly the climate is tropical and humid throughout the year. Many Irish travellers will use the island as a stopover. If this is for only 24 to 28 hours the extent of your jetlag may leave you little time to enjoy the country and its people.
Safety & Security
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Throughout Indonesia there are many regions where it is unsafe to travel. The Parliament in Indonesia may impeach the President in the near future. Civil disturbance with student demonstrations in the capital Jakarta, earthquakes in the island of Sumatra, unrest regarding the independence of Timor and profound warring fractions on the island of Borneo has the potential to spill over into Bali. Nevertheless during the past years Bali has remained stable and there have been few reports of serious disturbances that have affected tourists or business travellers. Lombok is an island close to Bali often visited by tourists. It is regarded as more unstable and recently (Dec 2000) four explosions during fighting between two villages (Bongor & Parampuan). The main tourist region around Senggigi has remained quiet.

Local Customs
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The laws against illegal drugs are severe and travellers should ensure that they carry sufficient well-marked medication that they may require for their time in Indonesia. Travellers are required to show identification at any time and so carrying photocopies of your passport is a wise precaution. Keep all valuable documents in a safe place and do not flaunt personal wealth while travelling around the island.
Night Activities
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The nightlife in Bali is one of the main attractions for many tourists but sensible precautions are required. Travelling alone is unwise. Take care to ensure that your drink could not be spiked at any stage and do not walk at night, use an authorised taxi where possible. The level of HIV infection among the bar workers is high and close personal contact is very unwise.
Medical Facilities
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The level of available health facilities varies greatly through Bali and other parts of Indonesia. In general most of the main hotels will have English speaking doctors but care would be required if your illness requires hospitalisation.
Food and Water
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It is wise to maintain a high level of care with regard to your food and water while in Indonesia. This includes even those in high quality hotels but also particularly for those eating from street vendors. Bivalve shellfish (e.g. oysters, mussels, clams etc) should be avoided at all times due to inadequate cooking. Bottled water should be purchased from your hotel or good quality shops to ensure that it is pure.
Mosquitoes and Insect Bites
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Malaria transmission occurs throughout Indonesia all year but the risk in Bali is so low that prophylaxis is not generally recommended for most tourists. Nevertheless for those visiting Lombok (overnight visits) the risk exists and prophylaxis should be considered. Other mosquito borne diseases also occur throughout Indonesia and care must be taken to avoid insect bites. In Jakarta and other main cities there is a particular problem with a viral disease called Dengue Fever. The mosquito, which transmits this disease, typically bites during the day and in main urban centres.
Sun Exposure
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The strength of the sun in Bali is considerable higher than that experienced in Ireland at any time of the year. Sufficient head covering should be worm when exposed and travellers should ensure that their fluid intake is sufficient. Salt depletion also needs to be replaced in times of significant perspiration.
Swimming
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If swimming in pools, make sure that sufficient chlorination has been used. Take care with small children when close to the deep end of the pool. If sea swimming make sure that there are always others around and that you heed any local advice and warning signs. Never swim soon after alcohol or for an hour after mealtime.
Jet Lag
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The extent of jet lag, which you will experience, depends on the duration of your flight and the amount of rest you were able to get before arrival. Try to rest for the first 24 hours to allow your body to acclimatise and make sure you do not fall asleep beside the swimming pool during this initial period.
Vaccinations for Bali
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There are no essential vaccines or entry to Bali from Western Europe. However for your personal protection travellers are recommended to consider vaccination cover against;
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Poliomyelitis (childhood booster)
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Tetanus (childhood booster)
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Typhoid (food & water disease)
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Hepatitis A (food & water disease)
Other travellers planning a more rural or extensive trip may need to consider other vaccine cover against diseases like Hepatitis B, Japanese B Encephalitis, Rabies.
Summary
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The majority of those visiting Bali will enjoy the many tourist attractions on the island. However commonsense and care is required to ensure that you do not expose yourself to unnecessary risk. The staff of the Tropical Medical Bureau can be contacted at either of the numbers below if you require further information.

Travel News Headlines WORLD NEWS

Date: Mon 20 Jan 2020
From: Alyssa Pyke <Alyssa.Pyke@health.qld.gov.au> [edited]

Queensland Health has reported an imported case of Japanese encephalitis virus (JEV) infection in an unvaccinated male who travelled from Bali to Australia in late 2019.

JEV is a mosquito-borne flavivirus and a leading cause of encephalitis throughout Asia. The virus is largely endemic in Indonesia, and a JEV vaccination program for children was initiated on the island of Bali in March 2018 (1).

Several reports have previously described encephalitis caused by JEV infections in travellers who contracted their illness in Bali (2, 3), including an unvaccinated, 10-year-old Australian girl, in 1989 (4).

Laboratory diagnostics performed at Forensic and Scientific Services (FSS) detected JEV RNA by real-time TaqMan qRT-PCR in a cerebrospinal fluid (CSF) sample taken from the imported JEV 2019 case. Specific anti-JEV IgM antibodies were detected in the same CSF sample and in an additional serum sample collected 2 days later using a multiplexed flavivirus microsphere immunoassay. Viral culture of the CSF sample yielded a JEV isolate, JEV Bali 2019.

The JEV Bali 2019 isolate was further characterized by massive parallel sequencing using both the NextSeq Illumina and GridION Oxford Nanopore platforms. The complete JEV 2019 genome sequence obtained was most closely related to a JEV Bali 2017 sequence (GenBank accession number LC461961) with which it shared 99.23% nucleotide identity.

Persistence of JEV and associated disease transmission in the popular tourist isle of Bali highlight this pathogen as an ongoing public health threat, and the continued incidence of cases with serious neurological symptoms, as described in this report, emphasize the importance of appropriate health and vaccination advice to prospective travellers to the region. The development of improved surveillance and diagnostics for JEV and other medically important pathogens should also be prioritized. Recently, whole genome sequencing has substantially enhanced these capabilities, affording timely provision of data regarding the types and genetic characteristics of circulating strains.

The diagnosis of the current JEV 2019 case with a history of travel in Bali, and rapid generation of a complete genome sequence from the recovered JEV Bali 2019 isolate, resulted from the combined efforts of the Public Health Virology and Microbiology laboratories at FSS, Queensland Health, which incorporate the Queensland Reference Centre for Microbial and Public Health Genomics; and the Queensland Health Medical staff at the Sunshine Coast University Hospital, Queensland, Australia.

References
1. Im J, Balasubramanian R, Yastini NW, Suwarba IGN, Andayani AR, Bura V, Jeon HJ, Clemens JD, Marks F. 2018. Protecting children against Japanese encephalitis in Bali, Indonesia. Lancet 391:2500-2501.
2. Wittesjo B, Eitrem R, Niklasson B, Vene S, Mangiafico J. 1995. Japanese encephalitis after a 10-day holiday in Bali. Lancet 345:856-857.
3. Buhl MR, Black FT, Andersen PL, Laursen A. 1996. Fatal Japanese encephalitis in a Danish tourist visiting Bali for 12 days. Scand J Infect Dis 28:189.
4. Macdonald WB, Tink AR, Ouvrier RA, Menser MA, de Silva LM, Naim H, Hawkes RA. 1989. Japanese encephalitis after a two-week holiday in Bali. Med J Aust 150:334-336, 339.
------------------------------------
Dr Alyssa Pyke
Public Health Virology
Forensic and Scientific Services
Department of Health, Queensland Government
Australia
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[As Dr. Pyke points out, individuals infected with JE virus and returning to Australia from Bali, Indonesia have appeared before, as recently as 2018 (see Japanese encephalitis - Indonesia: (BA,SW) http://promedmail.org/post/20181108.6132871).

The very thorough and remarkably rapid laboratory testing established the JE virus aetiology in this case. It is interesting that the sequences of their isolate matched 99.23% with the JEV Bali 2017 JE virus sequence. The current condition of the patient is not mentioned but obviously is a clinical case of JE. It will be interesting to learn whether JE vaccination is recommended for visitors to Bali, a popular tourist destination, and whether tourists will heed vaccination advice, given that JE cases are sporadic and less than 1% of JE virus infected individuals develop clinical illness.

The USA CDC notes that among patients who develop encephalitis, 20%-30% die. Although some symptoms improve after the acute illness, 30%-50% of survivors continue to have neurologic, cognitive, or psychiatric symptoms (see <https://www.cdc.gov/japaneseencephalitis/symptoms/index.html>). - ProMED Mod.TY]

[HealthMap/ProMED maps available at:
Date: Thu 16 Jan 2020
Source: Tempo.co [edited]

Anthrax threatens Ponjong and Semanu subdistricts in Gunung Kidul district, Yogyakarta province, after 27 residents were infected from consuming the meat of a dead cow, a local health official said on Wednesday [15 Jan 2020].

On 4 Jan 2020, health workers found that 600 residents of the 2 subdistricts could have been affected by anthrax, and 78 of them were observed to have the clinical features of this disease, Sumitro, head of the Disease Prevention and Control Unit at the Gunung Kidul Health Office, said. The local health authorities sent the blood samples of the victims for tests. The result showed that 27 people had tested positive to the disease, he told journalists in response to the latest anthrax cases in Gunung Kidul district.

The infected residents had been administered antibiotic prophylaxis for 20 days and were required to undergo another blood test at Bogor city's BBVEt facilities in West Java province, Sumitro said.

The residents who were suffering from the general signs and symptoms of this anthrax were just administered an antibiotic, he said, adding that the infected residents were not isolated because the disease was not contagious.

"Anthrax is a major cause of fatal disease in cattle, sheep, goats, camels, horses, and pigs throughout the world," the World Health Organization (WHO) has stated. It had caused the death of the owner of the infected cow because he had consumed the meat and regularly cleaned the cattle [pen], Sumitro further said.

In halting the spread of the disease, the district's health authorities had closely coordinated with those from the Food and Agriculture Office regarding education and public awareness campaign programs. "We have also disseminated information to the people at large urging them to cook any meat properly, and not to consume the meat of ailing animals," he added.

The anthrax poisoning cases have repeatedly occurred in certain parts of Indonesia over these past few years. But according to Widagdo Sri Nugroho, a University of Gadjah Mada (UGM) veterinarian, "Anthrax is actually found in almost all countries." He was quoted by the UGM's official website (2017) as saying that "of 180 states that join veterinary health organizations, anthrax is found in 94% of states. In Indonesia, it has been identified since 1884 in Teluk Betung, Lampung." [In fact, globally, anthrax is becoming less frequent, and an increasing number of countries are freed of it. - ProMED Mod.MHJ]

Some 22 provinces in Indonesia are endemic, Nugroho noted. In handling the disease, farmers need to be aware of their cattle's condition and are urged to contact veterinarians who would examine their cattle for any indications of anthrax, he added.  [Byline: Antara (translator), Petir Garda Bhwana (editor)]
======================
[Yogyakarta in is the middle of the southern coast of Java, Indonesia; see
<https://en.wikipedia.org/wiki/Yogyakarta>.
For a map of the province, see

If there were gastroenteric cases, this report would have listed deaths in an outbreak of this size. The 27 positive cases probably had cutaneous lesions. The lesson to be taken from this incident is how many humans can be put at risk in 2 communities by just butchering one sick and dying cow. - ProMED Mod.MHJ]

[HealthMap/ProMED-mail map:
Yogyakarta, Special Region of Yogyakarta, Indonesia:
Date: Tue, 7 Jan 2020 08:03:39 +0100 (MET)

Banda Aceh, Indonesia, Jan 7, 2020 (AFP) - A strong earthquake jolted Indonesia's northwest on Tuesday, but no tsunami warning was issued and there were no immediate reports of injuries or damage.   The 6.2 magnitude quake struck at a depth of 20 kilometres (12.5 miles) just off the coast of Simeulue island, west of Sumatra, according to the US Geological Survey.   Indonesia's weather and geophysics bureau said there was no tsunami threat.   People panicked and ran outside their homes when the quake hit.    "We are now watching at the beach to monitor the movement of seawater," Simeulue resident Ahmadi told AFP.

No casualties or infrastructure damage have been reported so far.   Indonesia suffers frequent seismic and volcanic activity due to its position on the Pacific "Ring of Fire", where tectonic plates collide.   More than 2,200 people died and another 1,000 were declared missing in 2018 after a 7.5 magnitude quake and subsequent tsunami on Sulawesi island.   A 9.1 magnitude earthquake on Boxing Day in 2004 struck Aceh province, causing a tsunami that claimed the lives of more than 170,000 people in Indonesia alone.
Date: Mon, 6 Jan 2020 09:59:14 +0100 (MET)

Jakarta, Jan 6, 2020 (AFP) - Indonesians were told on Monday to brace for more heavy downpours after record rains triggered flooding and landslides that authorities said had killed at least 66 people in and around Jakarta.   Whole neighbourhoods in the capital -- a megalopolis home to around 30 million people -- were submerged last week by floodwaters that forced tens of thousands into temporary shelters.

Authorities have warned residents to take precautions and safeguard their possessions ahead of more pounding storms over the coming weeks.   "There is still potential for mid to heavy rainfall with lightning, thunder and strong winds" in greater Jakarta, Indonesia's weather bureau said in a statement Monday.   Last week's deluge was the heaviest in the capital since record keeping began in the 19th century, the agency said, leading to the city's deadliest flood disaster in years.   Some 377 millimetres (14.8 inches) of rain pounded sections of the vast city, with floodwaters reaching up to the second floor of some buildings after rivers overflowed.

At least two people in Jakarta's west were hospitalised on Monday after the collapse of a five-storey building, which Indonesia's search and rescue agency said may have been caused by a build-up of rainwater.    Authorities said Monday the death toll had climbed again to 66 with two more reportedly missing in Lebak, west of the capital.

Flash flooding killed more than half a dozen people in Lebak, including a seven-year-old boy who was reportedly swept away by the water.   Thousands remained in cramped Jakarta shelters Monday as authorities pushed to reach isolated communities outside the city affected by the disaster.   A day earlier, health workers and soldiers sprayed ravaged parts of the capital with disinfectant in a bid to prevent disease outbreaks.
Date: Wed, 1 Jan 2020 13:29:14 +0100 (MET)

Jakarta, Jan 1, 2020 (AFP) - Nine people died after Indonesia's capital was hit by its deadliest flooding in years, authorities said Wednesday, as torrential rains on New Year's Eve left vast swathes of the megalopolis submerged.   Thousands were evacuated to temporary shelters as electricity was switched off in scores of waterlogged neighbourhoods across greater Jakarta, home to about 30 million people, with some train lines and one of the city's airports also shut.   Indonesia's National Disaster Mitigation Agency called on residents to leave flood-hit areas.   "The first priority is saving lives," said agency head Doni Monardo.

A 16-year-old was electrocuted by a power line, while three more people died of hypothermia, according to the disaster agency.   "My son's body was covered with newspaper when my two other children passed by," said Fadrid, who identified himself as the dead teen's father.   "People asked them whether they knew the victim. If they hadn't been passing by, we wouldn't have known my son had been killed," he told AFP.

Among the victims was an elderly couple trapped inside their home in a district where floodwaters reached as high as four metres (13 feet) after a river burst its banks.   Another victim drowned while four people were killed after the Tuesday evening downpour triggered landslides in the city's outskirts.    "We have shut down power (in many areas) to avoid more electrical shocks," Ikhsan Asaad, an official at state firm PLN, told AFP.

Asaad said he could not estimate how many residents had been affected by the power shutdown.   "We're currently focusing on taking measures to ensure people's safety," he added.   Angelina Widiyanti was among scores of residents whose houses were flooded with their possessions ruined by the disaster.   "We've had flooding several times before but it was never this high," she said from her home, where the power had been cut.   "We weren't prepared for this."

Authorities said about 19,000 people were evacuated, but that figure did not include residents in Jakarta's satellite cities.   "We're evacuating people right now," Jakarta governor Anies Baswedan told reporters.   "Everyone living near rivers should anticipate (more) flooding," he added.   Images from across the region showed waterlogged homes and cars submerged in muddy floodwaters, while some people took to paddling in small rubber lifeboats or tyre inner-tubes to get around.

The disaster marked Jakarta's worst flooding since 2013 when several dozen people were killed when the city was inundated by monsoon rains.   Jakarta is regularly hit by floods during Indonesia's rainy season, which started in late November.   On Wednesday, service at Halim Perdanakusuma airport, which handles commercial and military planes, was temporarily shut due to severe flooding on its runways, according to the transport ministry.   Many flights were transferred to Jakarta's main Soekarno-Hatta International Airport.
More ...

World Travel News Headlines

Date: Mon, 27 Jan 2020 01:07:04 +0100 (MET)

Wuhan, China, Jan 27, 2020 (AFP) - China's central government said on Monday that the nationwide total of confirmed infections from a deadly respiratory virus had risen to 2,744, with 769 new cases coming to light.   However, it said no new deaths were confirmed outside of Hubei province, which had earlier reported 24 new fatalities to bring the national total to 80 dead.
Date: Sun, 26 Jan 2020 22:16:28 +0100 (MET)

Beijing, Jan 26, 2020 (AFP) - Chinese authorities have ordered the extension of a public holiday in an effort to contain an epidemic that has killed 56 people and infected nearly 2,000 worldwide, state-run media reported.   A working group chaired by Premier Li Keqiang to tackle the outbreak decided on Sunday "to reduce population flows" by extending the Spring Festival holiday which had been scheduled to end on January 30, state news agency Xinhua said.   It was not immediately clear how long the extension is.

The group also ordered changes to "the starting dates of schools" and "people to work from home by working online."   "The meeting stressed that the country is at a crucial time in the prevention and control of the novel coronavirus outbreak, urging Party committees and governments at all levels to take more 'decisive, powerful and orderly, scientific and well-planned' measures to effective curb the spread," Xinhua reported.   In a bid to slow the spread of the respiratory virus, the government had previously locked down hard-hit Hubei, a province in central China that is at the outbreak's epicentre, in an unprecedented operation affecting tens of millions of people.

The previously unknown virus has caused global concern because of its similarity to the Severe Acute Respiratory Syndrome (SARS) pathogen, which killed hundreds across mainland China and Hong Kong in 2002-2003.   Originating in Hubei's capital of Wuhan, the virus has spread throughout China and across the world -- with cases confirmed in around a dozen countries including as far away as the United States.   Several countries were making arrangements to evacuate their citizens from Wuhan, where an eery calm pervades as new restrictions prohibit most road traffic in the metropolis of 11 million.
Date: Sun, 26 Jan 2020 21:47:53 +0100 (MET)

Washington, Jan 26, 2020 (AFP) - US health authorities said Sunday there are now five confirmed cases of the coronavirus in the United States and more are expected.   Nancy Messonnier, head of the respiratory disease section at the Centers for Disease Control and Prevention, said around 100 people in 26 states are being investigated for the virus, which originated in the Chinese city of Wuhan.

Of the confirmed cases, all five people had travelled to Wuhan, Messonier said during a conference call with reporters.   "Every case we have had in the United States is someone who has had direct contact in Wuhan," she said.   Messonier said there are two cases in California and one each in Arizona, Illinois and Washington state. Until now the toll was three.   While Chinese officials have launched an extraordinary emergency response, Messonier insisted that the health risk for Americans in general remains low "at this time."
Date: Sun, 26 Jan 2020 13:44:57 +0100 (MET)

Lagos, Jan 26, 2020 (AFP) - Nigerian health authorities have announced stepped-up emergency measures to tackle a rise in Lassa fever cases after 29 people died this month.   "As at 24th of January 2020, 195 confirmed cases and 29 deaths had been reported in 11 states," the Nigeria Centre for Disease Control (NCDC) said in a statement Saturday.   A national emergency operations centre had been activated to coordinate the response "to the increasing number of Lassa fever cases" across the country.

Endemic to Nigeria, Lassa fever belongs to the same family as the Ebola and Marburg viruses, but is much less deadly.   The virus is spread by contact with rat faeces or urine. It starts with fever and can, in worst case scenarios, lead to severe bleeding and organ failure.   Nigeria declared an outbreak of Lassa fever a year ago and around 170 people died from the virus in 2019.

The number of cases usually climbs in January due to weather conditions during the dry season.    Almost 90 percent of the recent confirmed cases have been in Edo, Ondo and Ebonyi states in southern Nigeria, but their have also been deaths in the north.

The NCDC said that compared to the same period last year the fatality rate had dropped from 23.4 percent to 14.8 percent.    It encouraged Nigerians to "practise good hygiene and take measures to protect themselves and their families".   Nigeria, Africa's most populous nation with a population of some 200 million, has five laboratories with the capability to diagnose Lassa fever.
Date: Sun, 26 Jan 2020 12:18:19 +0100 (MET)

Beijing, Jan 26, 2020 (AFP) - Two Chinese provinces and three cities have ordered citizens to wear face masks in public, to help control the spread of a deadly virus.   The measure is required in the provinces of Guangdong in the south and Jiangxi in the centre, plus the eastern city of Nanjing, Ma'anshan city in Anhui province, and Xinyang city in Henan, according to local authorities.   China's industry and information technology ministry has said it would "spare no effort in increasing supply" after demand for masks skyrocketed.
Date: Sun, 26 Jan 2020 04:03:51 +0100 (MET)

Hong Kong, Jan 26, 2020 (AFP) - Hong Kong's Disneyland announced it was shutting its doors on Sunday until further notice over the deadly virus outbreak in central China, a day after city authorities classified the crisis as an emergency.   "As a precautionary measure in line with prevention efforts taking place across Hong Kong, we are temporarily closing Hong Kong Disneyland park out of consideration for the health and safety of our guests and cast members," the park said in a statement.
Date: 26 Jan 2020
Source: MENAFN [edited]

Two more polio cases have surfaced from Landikotal tehsil in Khyber tribal district, after which the number of reported cases in Khyber Pakhtunkhwa has reached 4 this year [2020].

According to the Emergency Operations Centre (EOC), a 2-year-old [male child] from Nekikhel and another child from Torwela have been diagnosed with polio. The samples of these 2 children were sent for laboratory tests in 2019, so these cases will be counted in the tally of 2019, which stands at 141 now.

The 2 cases in Landiktoal were reported 2 days after the emergence of 3 new polio cases in Qambar, Dadu and Sajawal districts of Sindh. Among them, 2 children contracted the crippling disease in 2019, but the cases were confirmed on Friday [24 Jan 2020].

On [21 Jan 2020], the 1st case of polio in Pakistan in 2020 surfaced in Lakki Marwat, the district with the highest number of cases in 2019.

The year 2019 was worse for Pakistan in polio eradication efforts, as 141 cases surfaced in Pakistan, including 96 cases in KP. Most cases in KP surfaced in Lakki Marwat, where 32 children were diagnosed with the crippling disease. In 2018, only 12 cases were reported, while in 2017, 8 cases were reported.

Currently, Pakistan and Afghanistan are the only 2 countries in the world which have not fully eradicated polio. The main cause behind the emergence of so many polio cases is refusal of parents to cooperate with the vaccination teams. According to media reports citing Health Ministry data, over a million parents refused to cooperate with vaccination teams in 2019. Most of the refusal cases were reported in April last year [2019] when rumours spread in Peshawar that many children had fainted after consuming vaccination drops. A total of 1 089 087 parents refused to give vaccination drops to their children in 2019.

The emergence of so many polio cases in Pakistan, particularly in KP, has brought the federal and provincial governments under pressure over their performance and strategy to control the spread of disease.

Experts believe that polio vaccination efforts cannot succeed completely until the refusing parents are convinced to cooperate with vaccination teams.
==================
[The End Polio Pakistan website has not added all of the media reported cases as yet, so it's a bit difficult to follow at times and know which cases were 2019 onset and which were 2020 onset. The above media report clearly states 2019 onset and puts the tally for 2019 as 141 cases, but the media reports from Friday's [24 Jan 2020] report is less clear (see Poliomyelitis update (10): global, Pakistan (BA, SD) http://promedmail.org/post/20200124.6911971).

A good map of Pakistan showing districts and provinces can be found at:
Date: Fri 24 Jan 2020
Source: SciTechDaily [abridged, edited]

Citation: Amman BR, Bird BH, Bakarr IA, et al. Isolation of Angola-like Marburg virus from Egyptian rousette bats from West Africa. Nat Commun. 2020; 11:510.  <https://doi.org/10.1038/s41467-020-14327-8>

Scientists have detected Marburg virus in fruit bats in Sierra Leone, marking the 1st time the deadly virus has been found in West Africa. A total of 11 Egyptian rousette fruit bats tested positive for active Marburg virus infection. Research teams caught the bats separately in 3 health districts.

The presence of Marburg virus, a close relative to Ebola virus that also causes hemorrhagic disease in people, was detected in advance of any reported cases of human illness in Sierra Leone. However, the virus's presence in bats means people who live nearby could be at risk for becoming infected. No outbreaks have been reported to date.

The findings, based on PCR, antibody, and virus isolation data, were officially published today [24 Jan 2020] in the journal Nature Communications. Preliminary findings were announced earlier in December 2018 to ensure rapid notification to the citizens of Sierra Leone and the international health community.

The paper highlights the value of collaborating with government and key stakeholders across human, animal, and environmental sectors to engage at-risk communities about the discovery, address health concerns, and communicate risk-reduction strategies before recognized spillovers occur.

Marburg virus was detected by projects led by the Centers for Disease Control and Prevention, the USAID-funded PREDICT project led by the One Health Institute at the UC Davis School of Veterinary Medicine; Njala University, Sierra Leone; and the University of Makeni, Sierra Leone.

"Finding Marburg virus in bats in Sierra Leone before any known cases in people is a huge success, as public health officials and doctors can now include Marburg virus among the possible causes when diagnosing hemorrhagic fever cases in the region," said Tracey Goldstein, co-principal investigator and pathogen detection lead for the PREDICT project from the UC Davis One Health Institute.

To date, there have been 12 known outbreaks of Marburg virus, with the most recent in Uganda in 2017. The largest and deadliest outbreak occurred in Angola in 2005 when 227 people died. Five of the new strains identified among the Marburg-positive bats in Sierra Leone were genetically similar to the strain that caused the outbreak in Angola. This is the 1st time scientists have detected these Angolan-like strains in bats.

The virus-positive bats were all Egyptian rousette bats, the known reservoir for Marburg virus, which primarily feed on fruit. Infected bats shed the virus in their saliva, urine, and feces. Egyptian rousette bats are known to test-bite fruits, urinate, and defecate where they eat, potentially contaminating fruit or other food sources consumed by other animals or people, particularly children. These bats sometimes serve as a food source for local populations as well. People may be exposed to Marburg virus through bat bites as they catch the bats.

Following the announcement of the preliminary findings by the government of Sierra Leone, the PREDICT team worked with government partners, universities, and other key stakeholders to develop and implement evidence-based public health messaging across national, district, and local community levels in Sierra Leone.  "Over a year ago, we worked with our Sierra Leone government colleagues to inform people across the country as fast as possible of this new health risk and remind people not to harm or come in contact with bats," said Brian Bird from the UC Davis One Health Institute and global lead for Sierra Leone and Multi-Country Ebola operations for PREDICT-USAID. "I'm very proud of that work and our teams now that this full report is available."
----------------------------------------------
Communicated by:
ProMED-mail from HealthMap Alerts
<promed@promedmail.org>
and
Mary Marshall
===========================
[The initial report of this finding, prior to this publication, was posted by ProMED-mail (Marburg virus disease - Sierra Leone (02): bats, additional information http://promedmail.org/post/20181223.6221436) when the virus was detected for the 1st time in fruit bats in Sierra Leone.

According to the CDC (<https://www.cdc.gov/vhf/marburg/index.html>), Marburg virus was 1st recognized in 1967, when outbreaks of hemorrhagic fever occurred simultaneously in laboratories in Marburg and Frankfurt, Germany, and in Belgrade, Yugoslavia (now Serbia). A total of 31 people became ill, initially laboratory workers followed by several medical personnel and family members who had cared for them; 7 deaths were reported. The 1st people infected had been exposed to imported African green monkeys or their tissues while conducting research. One additional case was diagnosed retrospectively.

The reservoir host of Marburg virus is the African fruit bat, _Rousettus aegyptiacus_. Fruit bats infected with Marburg virus do not show obvious signs of illness. Primates (including humans) can become infected with Marburg virus, and may develop serious disease with high mortality.

Ebola virus is closely related to Marburg virus. "Ebola viral RNA fragments were found in an oral swab from a greater long-fingered bat (_Miniopterus inflatus_), captured in 2016 in Liberia's Sanniquellie-Mahn district, which borders Guinea. The bat, which lives in many parts of Africa, roosts in caves and feeds on insects. Scientists had previously found 2 other Ebola species in a related insect-eating bat, _M. schreibersii_. However, most other evidence has pointed to fruit bats as the carriers of Ebola Zaire, Epstein says [J Epstein, veterinary epidemiologist at EcoHealth Alliance in New York City and a member of the PREDICT consortium]. "What it really says to me is that this is a virus that has multiple hosts, and it might be regionally dependent as to which species carries it."

Supporting the variety of bat hosts for Ebola, the bat implicated in the initiation of the West African Ebola virus outbreak in December 2013 was _Mops condylurus_, long-tailed insect-eating bats, that were previously suspected in an outbreak of the Sudan strain of Ebola virus, which is related to the Zaire strain. - ProMED Mod.LK]

[HealthMap/ProMED-mail map:
Date: Sat, 25 Jan 2020 11:49:16 +0100 (MET)
By Su Xinqi, Jerome TAYLOR

Hong Kong, Jan 25, 2020 (AFP) - Hong Kong on Saturday declared a new coronavirus outbreak as an "emergency" -- the city's highest warning tier -- as authorities ramped up measures to reduce the risk of further infections.   The announcement came as city leader Carrie Lam faced criticism in some quarters over her administration's response to the crisis.

Of the five people who have tested positive for the virus in Hong Kong so far, four arrived via a newly built high-speed train terminal which connects with the mainland.   That led to calls from some medical experts and politicians to limit, or even halt, arrivals from China, the epicentre of the outbreak with 41 people dead.

Lam held emergency meetings with health officials on Saturday morning after returning from Davos.   "Today I declare the lifting of the response level to emergency," she told reporters.   Schools and universities, which are currently on a Lunar New Year break, would remain closed until 17 February, Lam said.   All mainland arrivals to Hong Kong will now need to sign health declaration forms, she added, while public events including a new year gala and next month's marathon, would also be called off.    "We haven't seen serious and widespread infections (in Hong Kong), but we are taking this seriously and we hope to be ahead of the epidemic," Lam said.

- Tragic past -
Hong Kong has a recent experience of deadly viral outbreaks.    Nearly 300 people were killed by SARS in 2003, a tragedy that left a profound psychological impact on one of the most densely populated places on earth.   The city's ability to combat the crisis was hampered by moves in mainland China to cover up and play down the outbreak, leaving a lasting legacy of distrust among many Hong Kongers.   Animosity towards the mainland has intensified in recent years as Beijing tightens political control over the semi-autonomous territory.

The outbreak also comes at a sensitive time for Lam, who currently boasts record low approval ratings after seven months of pro-democracy protests.   "We must stand united so that we can prevent and control the disease," she said, in a nod to the political unrest.   The often violent protests have battered Hong Kong's reputation for stability and helped tip it into recession, with the recent virus outbreak compounding the city's economic woes.

Hospitals are already struggling with the winter flu season, but officials are isolating anyone with a history of travel to central China and those exhibiting respiratory tract infections that look similar to the virus.   So far some 300 people have been tested and monitored for the virus. Quarantine centres have been set up in remote holiday parks for anyone found to have come into close contact with people who tested positive.   On Saturday, officials announced a newly built but still-empty public housing block would be used for medical staff on the frontline who did not want to risk returning to their families.
Date: Sat, 25 Jan 2020 06:46:59 +0100 (MET)
By Mahmut Bozarslan and Fulya Ozerkan in Istanbu

Elazig, Turkey, Jan 25, 2020 (AFP) - A powerful earthquake has killed at least 20 people and injured more than 1,000 in eastern Turkey, as rescue teams searched through the rubble of collapsed buildings for survivors on Saturday.    At least 30 people were missing following the magnitude 6.8 quake on Friday night, which had its epicentre in the small lakeside town of Sivrice in the eastern province of Elazig.   "It was very scary, furniture fell on top of us. We rushed outside," 47-year-old Melahat Can, who lives in the provincial capital of Elazig, told AFP.   President Recep Tayyip Erdogan said all steps were being taken to aid people affected by the quake, which caused widespread fear.   "We stand by our people," Erdogan said on Twitter.

The Turkish government's disaster and emergency management agency (AFAD) said the quake hit Sivrice at around 8.55 pm (1755 GMT). Turkey lies on major faultlines and is prone to frequent earthquakes.    Turkish television showed images of people rushing outside in panic, as well as a fire on the roof of a building.   Interior, environment and health ministers, who were in the quake zone, said the casulties were in Elazig province and in the neighbouring province of Malatya, which lies to the southwest.

At least 20 people died and 1,015 others were wounded, according to AFAD.   "There is nobody trapped under the rubble in Malatya but in Elazig search and rescue efforts are currently under way to find 30 citizens," Interior Minister Suleyman Soylu said on Friday.   Rescue teams were searching for survivors trapped in a five-storey collapsed building in a village some 30 kilometres from Elazig, according to AFP journalists at the scene. One person was pulled alive from the rubble.   Emergency staff and people waiting at the scene lit fires in the streets to stay warm in freezing temperatures.   Sports centres, schools and guest houses had been opened to accommodate quake victims in Malatya.

- 'Everybody is in the street' -
Sivrice -- a town with a population of about 4,000 people -- is situated south of Elazig city on the shores of Hazar lake -- one of the most popular tourist spots in the region and the source of the Tigris river.   The lake is home to a "Sunken City", with archaeological traces dating back 4,000 years in its waters.

The tremor was felt in several parts of eastern Turkey near the Iraqi and Syrian borders, the Turkish broadcaster NTV reported, adding that neighbouring cities had mobilised rescue teams for the quake area.   "Everybody is in the street, it was very powerful, very scary," said Zekeriya Gunes, 68, from Elazig city, after the quakes caused a building to collapse on her street.   "It lasted quite long, maybe 30 seconds," added Ferda, 39. "I panicked and was undecided whether to go out in this cold or remain inside."

The US Geological Survey assessed the magnitude as 6.7, slightly lower than AFAD, adding that it struck near the East Anatolian Fault in an area that has suffered no documented large ruptures since an earthquake in 1875.   "My wholehearted sympathy to President @RTErdogan and the Turkish people following the devastating earthquake that has hit Turkey. Our search and rescue teams stand ready to assist," Greek Prime Minister Kyriakos Mitsotakis wrote on Twitter.   In Athens, the Greek premier's office said later that Mitsotakis had spoken by phone to Erdogan.   "The Turkish president... said Turkish teams had the situation under control for now and that it would be re-evaluated in the morning," his office added.

In 1999, a devastating 7.4 magnitude earthquake hit Izmit in western Turkey, leaving more than 17,000 people dead including about 1,000 in the country's largest city Istanbul.    In September last year, a 5.7-magnitude earthquake shook Istanbul, causing residents to flee buildings in the economic capital.   Experts have long warned a large quake could devastate the city of 15 million people, which has allowed widespread building without safety precautions.